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PlantHub workflows
Dataset pre-processing
TRY - A database of plant functional traits
Batch pre-processing of categorical data from TRY
Prepare Dispersal syndrome data from TRY for use
Prepare Dispersal unit type data from TRY for use
Prepare Flower color data from TRY for use
Prepare Flower sex data from TRY for use
Prepare Fruit dehiscence type data from TRY for use
Prepare Fruit type data from TRY for use
Prepare Inflorescence type data from TRY for use
Prepare Leaf compoundness data from TRY for use
Prepare Leaf distribution along the shoot axis (arrangement type) data from TRY for use
Prepare Leaf margin type data from TRY for use
Prepare Leaf phenology type data from TRY for use
Prepare Leaf shape data from TRY for use
Prepare Leaf type data from TRY for use
Prepare Leaf venation type data from TRY for use
Prepare Leaflet number per leaf data from TRY for use
Prepare Mycorrhiza type data from TRY for use
Prepare Photosynthesis pathway data from TRY for use
Prepare Plant functional type (PFT) data from TRY for use
Prepare Plant growth form data from TRY for use
Prepare Plant growth rate data from TRY for use
Prepare Plant life form data from TRY for use
Prepare Plant life span (longevity) data from TRY for use
Prepare Plant nitrogen(N) fixation capacity data from TRY for use
Prepare Plant reproductive phenology timing (flowering time) data from TRY for use
Prepare Plant resprouting capacity data from TRY for use
Prepare Plant woodiness data from TRY for use
Prepare Pollination syndrome data from TRY for use
Prepare Root type, root architecture data from TRY for use
Prepare Seed storage behaviour data from TRY for use
Prepare Species genotype chromosome ploidy data from TRY for use
Prepare Species habitat characterization data from TRY for use
Prepare Species occurrence range: climate type data from TRY for use
Prepare Species occurrence range: native vs invasive data from TRY for use
Prepare Species tolerance to fire data from TRY for use
Prepare Species tolerance to frost data from TRY for use
Prepare Wood fibre types data from TRY for use
Prepare Wood growth ring distinction data from TRY for use
Prepare Wood vessel perforation plates data from TRY for use
sPlot - A global database on vegetation surveys
PhenObs - Phenological observations in botanical gardens
GloNAF - A global database of naturalized and alien flora
Taxonomic name resolution - gfö NFDI workshop at the gfö Macroecology meeting 2024
Taxonomic name parsing
Taxonomic name resolution
Vernacular name matching
Data cleaning, manipulation, visualization, and R library cheatsheets
Data cleaning
Outlier removal using normal distributions
Data manipulation
Digitize data from images
Image metadata editing
Microsoft PowerPoint - set font and language for a whole presentation
Data visualization
Create Digital Elevation Models using regional data
R library cheatsheets
RSelenium - Automating the control of web browsers
data.table - An extremely fast R library for basic dataset handling
Workflows from published studies
Citizen science observations encode global trait patterns
Preprocessing iNaturalist data
Packages
Link iNaturalist observations to TRY
sPlotOpen Preprocessing
Make trait maps
Compare sPlotOpen and iNaturalist trait maps
Density vs. Difference
Compare sPlotOpen to published trait maps
Compare sPlotOpen to published trait maps
Density of observations/plots in climate space
Differences among biomes
Growth forms coverage
Aggregate iNaturalist data in buffers around sPlot plots
Calculate correlation of sPlot CWM and iNaturalist averages
Comparing iNaturalist to Schiller maps
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